Module regstruct :: Class RegStructTranssys
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Class RegStructTranssys

source code

Instance Methods [hide private]
 
__init__(self, tp_name, reg_rtp, struct_rtp, regulon_size_list, radius) source code
 
add_regulon(self, g, num_structural_genes, struct_rtp, angle, a_range, radius)
add a regulon, consisting of num_structural_genes controlled by gene number g, to transsys program self.tp.
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regnet_factors(self) source code
 
choose_perturbed_factors(self, num_perturbed_factors, rng) source code
 
write_genegroups(self, f) source code
Method Details [hide private]

add_regulon(self, g, num_structural_genes, struct_rtp, angle, a_range, radius)

source code 

add a regulon, consisting of num_structural_genes controlled by gene number g, to transsys program self.tp. Parameters for the promoter and the factor are generated using RandomTranssysParameters instance struct_rtp, but not all facilities are used.