Everything
All Classes
arrtool.ExperimentSpec
arrtool.MicroarrayData
regstruct.ClusterNode
regstruct.ExpGaussPerturber
regstruct.ExponentialReplacementPerturber
regstruct.RTAControlParameters
regstruct.RegStructTranssys
regstruct.RegulonDescriptor
regstruct.UniformReplacementPerturber
transdecode.BindingSite
transdecode.DNABinder
transdecode.RawDNAGene
transdecode.TranssysDNADecoder
transdisrupt.ErrorLogger
transdisrupt.ExpressionSimilarityMatrix
transdisrupt.KnockoutTranssysProgram
All Functions
arrtool.cmp_by_score
regstruct.get_namevalue
regstruct.parse_cluster
regstruct.parse_int_csv
regstruct.parse_string_csv
regstruct.regcontrol_factor_name
regstruct.regcontrol_gene_name
regstruct.regulon_name
regstruct.struct_gene_name
regstruct.struct_protein_name
transdecode.baseToInt
transdecode.find_binding_sites
transdecode.normalisedColumn
transdisrupt.adjacency_matrix
transdisrupt.adjacency_matrix_scorefunc
transdisrupt.create_disruption_network
transdisrupt.gene_factor_dictionary
transdisrupt.identity_perturber
transdisrupt.knockout_concentration_matrix
transdisrupt.knockout_concentration_matrix_lsys
transdisrupt.link_scorefunc
transdisrupt.logratio_matrix
transdisrupt.overlaps
transdisrupt.pathscore_matrix
transdisrupt.reconstructed_adjacency_matrix
transdisrupt.referencestate_concentration_matrix
transdisrupt.score_matrix
transdisrupt.uniform_cmp
All Variables
arrtool.__package__
[hide private]